See below.
| IMPORTANT NOTE | |
| We have a bioperl machine
on the net now, http://bio.perl.org. All
code here should be considered obsolete. All current and future work is
directed towards the central bioperl distribution. Check the bioperl website
for the most up-to-date news.
|
|
This is a temporary holding site for work that I am doing with Bio::Seq and Bio::Seq::Parse. The project is part of the general bioperl effort.
PreSeq.pm implements a perl5 object that contains a single biological sequence. It contains simple methods for sequence manipulation and formatting and can be used by itself or as a base class for more complex situations.
Parse.pm is a skeletal (so far) interface to the ReadSeq package.
Perl is used throughout the bioscience fields in many different applications. It is hoped that creating useful modules under the Bio::* hierarchy will greatly facilitate the free exchange of ideas, knowledge and code. Comments, suggesstions (and help!) are greatly appreciated. This code is freely distributed under the terms of the Perl "Artistic License".
The raw directory index may be more useful.
Contents of /bioperl/ --------------------------------------------------------- Bio-PreSeq-0.04.tar.gz Current Distribution package README Distribution Notes MANIFEST List of files in the current distribution Changes Revision History ToDo Future work needed PreSeq.pm current module code PreSeq.pm.html pod2html translation of PreSeq.pm Parse.pm Perl interface to ReadSeq package Parse.pm.html pod2html translation of Parse.pm examples/seq_layout.pl test script for output methods examples/seq_layout.stdout STDOUT from runing testSeq_layout.pl examples/testSeq.pl module test script examples/testSeq.stdout STDOUT from running testSeq.pl examples/testSeq.stderr STDERR from running testSeq.pl examples/sample.tfa Sequence files used by test code examples/sample.gcg examples/Igfrag.fasta examples/Ifgrag.raw examples/Ifgrag1.pir examples/P01703.fasta examples/P01702.fasta examples/P01702.raw examples/bovgh.seq --------------------------------------------------------- ANONYMOUS FTP: bio.perl.org/pub/dag/Bio-PreSeq-0.04.tar.gzChris Dagdigian, Genetics Institute, Cambridge MA USA.